Navigating the Path to Independence: Inside Germany's Academic Career Landscape

Posted 17th June 2026

Introduction

The journey from postdoc to principal investigator is rarely straightforward, and in Germany, that path comes with its own unique considerations. Recently, we hosted a webinar with two scientists who successfully made this transition: Dr. Janelle Pakan, Professor of Circuit Neuroscience at Otto von Gerich University in Magdeburg and group leader at the Leibniz Institute of Neurobiology and Dr. Sabine Krabbe, a group leader at the German Center for Neurodegenerative Diseases. Their insights offered a candid look at what it really takes to establish independence in the German system.

Watch the full webinar

Understanding the Landscape: Universities vs. Research Institutes

"In my experience, it's particularly unique in Germany that you really have a lot of non-university institutes that do really high-quality research," Dr. Pakan explained. University positions typically come with teaching, administration, and committee work, but they also offer something increasingly rare in academic science: permanence. Many professorships include civil servant status, bringing long-term security, pension benefits, and tax advantages.

Non-university institutes, by contrast, tend to be better resourced, with additional federal and sometimes state funding. Researchers there can focus almost exclusively on science, with minimal teaching obligations. The trade-off is that these positions are often fixed-term, creating pressure to progress within five to six years.

The most sought-after arrangements are joint appointments, which combine a group leader role at a research institute with an associated university professorship. These offer both strong research resources and the security of a university affiliation.

Navigating Germany's Unique Structural Challenges

For scientists returning to or arriving in Germany, some aspects of the system can be surprising. Dr. Krabbe, who completed her PhD in Germany before working in Switzerland and the United States, found herself confronting significantly greater administrative demands on her return. "What was surprising to me is how much administrative duties increased," she noted. Animal licences, HR issues, and regulations around genetically modified organisms all require substantial paperwork, regardless of institutional setting.

Another major factor is the Wissenschaftszeitvertragsgesetz, which limits how long researchers can be employed on fixed-term contracts during their qualification phase. At present, that usually means six years for a PhD and six additional years as a postdoc. After that, researchers generally need either a group leader role or a permanent contract. Although the law was introduced to address concerns about job security, in practice it has intensified pressure on postdocs to transition quickly to independence.

There are exceptions, particularly for fully third-party funded positions, but navigating them can be far from simple. As Dr. Krabbe wryly observed, when she asked HR about exceptions, "they basically gave me a thick, red book, saying, yeah, we can search for that in the book."

Multiple Pathways, But Not Always by Choice

When it comes to establishing your own group, Germany offers several routes: Emmy Noether grants from the DFG, ERC Starting Grants, junior professorships, Helmholtz young investigator groups, and institutional group leader positions. Each comes with different eligibility windows and constraints.

"It's not necessarily that you can decide," Dr. Krabbe pointed out. Emmy Noether positions typically require applications within four years of completing a PhD, with extensions for family obligations. ERC Starting Grants recently extended their window from seven to ten years post-PhD, which makes them more accessible for systems neuroscientists whose training periods are often longer. Helmholtz group leader positions generally expect applications within six years of the PhD.

Dr. Krabbe's strategy was to apply broadly but selectively. "What I did is I applied for everything where I could apply, but only to places where I said this is where I could really see myself going." Her advice for candidates who hesitate because they do not meet every criterion is equally direct: "Don't restrict yourself to junior professorships. Go for a W2, for example. Even if people tell you that's too high for you - just try it out, because maybe they consider you qualified enough to actually do this job."

Building Independence During the Postdoc Years

Whether applying for grants or positions, the ability to demonstrate independence from your postdoctoral supervisor proves essential. This isn't something you can manufacture at the application stage - it requires strategic thinking throughout your postdoc.

Start by developing your own ideas and, ideally, securing your own funding. Even small grants from private foundations can signal that your independent concepts attract support. "Every talk is a job talk," Dr. Krabbe emphasised, underscoring the importance of visibility. Organising symposia under your own name, supervising students independently, and negotiating for shared senior authorships can all help strengthen that profile.

When shaping her research direction, Dr. Krabbe found success by combining expertise from different stages of her training. "I thought about how can I combine this? What is my unique expertise which neither my PhD advisor nor my postdoc advisor could say, this is theirs, but this is actually really tailored to myself."

Just as importantly, discuss your plans openly with your postdoc adviser. Some are generous about allowing preliminary data to be used in your own grant applications; others are more restrictive. Either way, transparency helps prevent future conflict. "What I would strictly advise against is doing something against your advisor's back," Dr. Krabbe cautioned.

What Hiring Committees Are Really Looking For

After serving on numerous hiring committees, Dr. Pakan has developed a clear view of what separates compelling applications from the rest. Scientific excellence is necessary, but not sufficient. "You should have a really clear and original scientific vision that is really unmistakably yours," she explained.

One common mistake is thinking too narrowly. Postdocs often propose what amounts to their next personal project, rather than a broader programme for a team. As Dr. Pakan put it, "When you're applying for your first PI position, you really have to think what would I have a postdoc of my own under me, and two PhDs, maybe a technician do, and plan for a 5-year, 6-year project?" Committees want to see evidence that you can think strategically about how to move a field forwards.

Tailoring matters enormously. "You can really tell" when someone has submitted a generic application, Dr. Pakan noted. Committees are often large and busy, so an application that clearly references the institute's mission, potential collaborators, or recent initiatives immediately signals serious preparation. As she put it, "they've done their homework."

Committee members are also thinking about long-term fit. "These people are often giving up resources for you," Dr. Pakan pointed out. "They also want to make sure that you're gonna be a good person to work with, right? That you're gonna be complimentary to the science of their institute."

The Reality of Hiring Timelines

Understanding how decisions actually get made can help manage expectations during what can be an agonizingly slow process. In Germany, hiring committees operate under strict, regulated procedures designed to ensure fairness. For senior positions, committees typically include 10-15 members: professors from various fields (sometimes including disciplines outside your own), equal opportunity officers, and often student representatives for teaching-focused roles.

The timeline can stretch considerably. After a job posting closes, assembling the committee, reviewing applications, creating a shortlist, and arranging interviews can take months. Shortlisted candidates then present a scientific talk and often a teaching sample, which can be especially revealing. "We always ask for the teaching sample," Dr. Pakan explained. "We ask that they teach something they would not normally teach, and that is out of their field... because we want to see, like, can they develop new curriculum?"

After interviews, the committee usually sends top candidates for external review, adding further weeks or months. Then come faculty approval, Senate approval, and finally a job offer to the first-ranked candidate. "The fastest I've ever seen is maybe 6 months, which was super fast, and sometimes they can be 2 years or more," Dr. Pakan noted. Throughout this process, lower-ranked candidates often receive no updates, which can be difficult but is simply part of the system.

The Hidden Value of Networking

When discussing networking, both Dr. Krabbe and Dr. Pakan emphasised that it extends far beyond relationships with senior researchers. Peer networks, made up of people at similar career stages, can be especially valuable. "Those are the people you will collaborate with, or who, on the other hand, might review your papers," Dr. Krabbe observed.

She is part of a network of junior group leaders and professors that provides practical support and reassurance. "It really helps so much to talk to them and say, here, I'm struggling with this, do we have a solution? And it's also nice to get a confirmation that other people have the same problems."

Even competitors for the same positions can become collaborators. Many of Dr. Krabbe's current colleagues are people she met during interviews at other institutions. "It's usually about a strategic fit. So it's not that one person is better than you. One person was for that department the better fit." Rather than viewing fellow applicants as enemies, it is worth recognising that many of those connections may later become valuable collaborations.

One particularly actionable piece of advice is simply to let people know when you begin applying. "I was told to do that by someone who then said, oh yeah, when I told people, then I was approached for certain jobs," Dr. Krabbe shared. Making your availability known can lead to unexpected invitations that align closely with your expertise.

Preparing for Interviews and Institutional Fit

Both speakers emphasized research that extends beyond browsing an institute's website. Before interviews, you should know key details about every person you might encounter on the committee. When inevitably asked, "Who do you want to collaborate with?"- and this question always comes - you need thoughtful, specific answers grounded in actual knowledge of their recent work.

Many early-career researchers do not realise how proactive they can be at this stage. "You can call up any, you know, anybody working at the Institute," Dr. Pakan explained. "You can also talk to other postdocs, you really should. You can call PIs that are working there, or email them and ask them if they have a minute to talk to you."

These conversations often provide current information that websites do not. Demonstrating knowledge of initiatives not yet publicly announced can signal genuine interest and initiative that committees notice.

Grant-Funded Groups vs. Institutional Positions

The application processes for grant-funded positions versus institutional roles differ substantially. For grant-funded positions like Emmy Noether or ERC groups, you're essentially making a cold approach: a brief email to department chairs or institute directors with a one- to two-page research proposal and concise CV, asking if they'd consider hosting your group.

Here, the emphasis is on originality and fit. But you need more than an endorsement letter; you need genuine institutional investment. "You want them to invest in you," Dr. Krabbe stressed, because grant reviewers also evaluate the host institution's commitment. If an institution only offers space without contributing equipment or personnel, it is unlikely to be competitive.

This creates negotiating leverage. Some institutions will offer tenure-track W2 professorships contingent on securing an ERC. Multiple conversations with different potential hosts can help you identify the best strategic fit.

Institutional positions, by contrast, are strictly advertised and require meticulous tailoring to each specific opening. The emphasis shifts from pure originality to strategic fit within the institute's long-term mission - particularly at non-university institutes with defined research priorities.

Staying Motivated in a Competitive System

When confronting statistics showing that less than 1% of PhDs ultimately obtain professorships, it is easy to feel discouraged. But Dr. Pakan offered important context: only about 14–15% of PhD students actually want to pursue academic careers, and among those, only about a third aspire specifically to professorships. "So actually, when you put it into the big context of things, the odds are not that bad."

Her advice? If you decide this path is for you, commit fully and inform yourself about expectations. "If you feel like this is something you're really passionate about, just go for it. And, you know, inform yourself about the statistics, but don't get scared about them."

The position genuinely is attainable - but it demands dedication, strategic thinking, and resilience through what will inevitably be numerous rejections. Every failed application teaches something. Every talk, every networking conversation, every grant submission contributes to the trajectory, even when the immediate outcome disappoints.

Professor Janelle Pakan

Prof. Janelle Pakan is a systems neuroscientist whose international career spans leading research institutions in Canada, Ireland, the United Kingdom, and Germany. After completing her PhD in Neuroscience at the University of Alberta in Canada in 2009, she took up a series of Postdoctoral Fellowships, including a Marie Skłodowska-Curie Fellowship working with Prof. Nathalie Rochefort in Edinburgh in 2014. She then established her independent research group in 2017 at the Otto von Guericke University, where she developed a research program focused on how neural circuits integrate sensory information to guide behaviour.

In 2024, she was appointed W2 Professor of Circuit Neuroscience at the OVGU and Group Leader at the Leibniz Institute for Neurobiology, supported by a Leibniz Programme for Women Professors award. Her work combines in vivo imaging, behavioural paradigms, and computational approaches to investigate how brain states shape perception, learning, and adaptive behaviour across distributed neural networks.

Beyond her research, she plays an active role in the European neuroscience landscape, contributing to collaborative initiatives and large-scale research consortia supported by the German Research Foundation. She serves on various academic boards and is involved in the training and mentorship of early-career researchers through graduate programs, summer schools, and international collaborations. Together, her career reflects a sustained trajectory of scientific leadership, interdisciplinary collaboration, and investment in academic community building.

The Pakan Lab Website

Prof. Janelle Pakan, Professor of Circuit Neuroscience, Otto‑von‑Guericke University Magdeburg & Group Leader, Leibniz Institute for Neurobiology (LIN), Magdeburg

Dr Sabine Krabbe

Dr Sabine Krabbe is a systems neuroscientist and Research Group Leader at the German Center for Neurodegenerative Diseases (DZNE) in Bonn, where she leads the “Functional Diversity of Neural Circuits” group. She studied Human Biology at Philipps University Marburg, specialising in neurobiology and immunology, before completing her doctorate in Natural Sciences/Neuroscience with work on dopaminergic dysfunction in schizophrenia. She then pursued postdoctoral research at the Friedrich Miescher Institute for Biomedical Research in Basel and was a Visiting Scientist at the HHMI Janelia Research Campus in the United States.

Since establishing her independent group at DZNE in 2020, Dr Krabbe has developed a research programme centered on how neural circuits integrate internal states and environmental cues to guide behaviour, with a specific focus on learning and decision-making. Her work combines deep-brain calcium imaging, circuit manipulation, electrophysiology, anatomical and molecular approaches to understand the functional diversity of neural circuits, with particular relevance to early psychiatric dysfunctions in Parkinson’s disease. Her achievements include an ERC Consolidator Grant, a CZI Ben Barres Award and a recently awarded Helmholtz Professorship.

Dr Sabine Krabbe, Group Leader, German Center for Neurodegenerative Diseases (DZNE), Bonn

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